Revert "Expose maketitle by just using \input"

Closes #91

.github/workflows/latex-lint.yml

@@ -0,0 +1,52 @@
+name: LaTeX Lint
+
+on:
+  push:
+    branches:
+      - main
+      - dev
+    paths:
+      - 'latex/**/*.tex'
+      - 'latex/main.tex'
+  workflow_dispatch:
+  
+jobs:
+  lint:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Install chktex
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y chktex
+
+      - name: Run chktex inside latex/
+        working-directory: latex
+        run: |
+          TEX_FILES=$(find . -type f -name "*.tex")
+          if [ -z "$TEX_FILES" ]; then
+            echo "No .tex files found in latex/. Skipping lint."
+            exit 0
+          fi
+          
+          echo "🔍 Linting .tex files with chktex..."
+          FAIL=0
+          
+          for f in $TEX_FILES; do
+            echo "▶ Checking $f"
+            # Run chktex and show output; capture error status
+            if ! chktex "$f"; then
+              echo "::warning file=$f::ChkTeX found issues in $f"
+              FAIL=1
+            fi
+          done
+          
+          if [ $FAIL -ne 0 ]; then
+            echo "::error::❌ Lint errors or warnings were found in one or more .tex files above."
+            exit 1
+          else
+            echo "✅ All files passed chktex lint."
+          fi

.github/workflows/latexdiff.yml

@@ -0,0 +1,89 @@
+name: LaTeX Diff
+
+on:
+  workflow_dispatch:
+    inputs:
+      base_branch:
+        description: 'Base branch (older version)'
+        required: true
+      compare_branch:
+        description: 'Compare branch (new version)'
+        required: true
+
+jobs:
+  latexdiff:
+    runs-on: ubuntu-latest
+    container:
+      image: ghcr.io/xu-cheng/texlive-full:latest
+      options: --user root
+
+    steps:
+      - name: Install latexpand (Perl script)
+        run: |
+          tlmgr init-usertree
+          tlmgr install latexpand
+        
+      - name: Checkout base branch
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ github.event.inputs.base_branch }}
+          path: base
+
+      - name: Checkout compare branch
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ github.event.inputs.compare_branch }}
+          path: compare
+
+
+      - name: Create output folder
+        run: mkdir -p diff_output
+
+      - name: Flatten base/main.tex (with latexpand)
+        run: |
+          cd base/latex
+          echo "📂 Listing files in base/latex:"
+          ls -R
+          echo "🔄 Flattening with latexpand..."
+          latexpand --verbose --keep-comments --output=../../diff_output/base_flat.tex main.tex
+          echo "✅ Preview of base_flat.tex:"
+          head -n 50 ../../diff_output/base_flat.tex
+
+
+      - name: Flatten compare/main.tex (with latexpand)
+        run: |
+          cd compare/latex
+          echo "📂 Listing files in compare/latex:"
+          ls -R
+          echo "🔄 Flattening with latexpand..."
+          latexpand --verbose --keep-comments --output=../../diff_output/compare_flat.tex main.tex
+          echo "✅ Preview of compare_flat.tex:"
+          head -n 50 ../../diff_output/compare_flat.tex
+
+      - name: Generate diff.tex using latexdiff
+        run: |
+          latexdiff diff_output/base_flat.tex diff_output/compare_flat.tex > diff_output/diff.tex
+          
+      - name: Upload flattened .tex and diff.tex early
+        uses: actions/upload-artifact@v4
+        with:
+          name: latex-diff-tex
+          path: |
+            diff_output/base_flat.tex
+            diff_output/compare_flat.tex
+            diff_output/diff.tex
+            
+      - name: Copy thesis.cls to diff_output
+        run: cp compare/latex/thesis.cls diff_output/
+        
+      - name: Compile diff.tex to PDF
+        working-directory: diff_output
+        run: |
+          xelatex -interaction=nonstopmode diff.tex
+          xelatex -interaction=nonstopmode diff.tex
+
+      - name: Upload diff output files
+        uses: actions/upload-artifact@v4
+        with:
+          name: latex-diff-output
+          path: diff_output/

.github/workflows/latexmk.yml

@@ -0,0 +1,29 @@
+name: Render XeLaTeX on PR to dev
+
+on:
+  pull_request:
+    branches:
+      - dev
+
+jobs:
+  build-pdf:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Compile XeLaTeX
+        uses: dante-ev/latex-action@2021-A
+        with:
+          root_file: main.tex
+          working_directory: latex
+          compiler: xelatex
+          args: -interaction=nonstopmode -halt-on-error -file-line-error
+          extra_system_packages: "fonts-freefont-otf"
+
+      - name: Upload compiled PDF
+        uses: actions/upload-artifact@v4
+        with:
+          name: compiled-pdf
+          path: latex/main.pdf

.gitignore

@@ -1,4 +1,5 @@
 # Ignore CSV files in the data directory and all its subdirectories
 data/**/*.csv
 .venv/
-*.pyc
+*.pyc
+*.egg-info/

.gitmessage

@@ -21,6 +21,7 @@
 # 
 # Scope:
 #   latex    (changes to thesis LaTeX)
+#   documentclass (LaTeX in-house document class changes)
 #   src      (changes to Python source code)
 #   nb       (changes to notebooks)
 #   ml       (ML model specific changes)

.vscode/settings.json

@@ -1,3 +1,4 @@
 {
-  "python.analysis.extraPaths": ["./code/src/features"]
+  "python.analysis.extraPaths": ["./code/src/features"],
+  "jupyter.notebookFileRoot": "${workspaceFolder}/code"
 }

README.md

@@ -16,3 +16,8 @@ The repository is private and access is restricted only to those who have been g
 All contents of this repository, including the thesis idea, code, and associated data, are copyrighted © 2024 by Rifqi Panuluh. Unauthorized use or duplication is prohibited.
 
 [LICENSE](https://github.com/nuluh/thesis?tab=License-1-ov-file#readme)
+
+## How to Run `stft.ipynb`
+
+1. run `pip install -e .` in root project first
+2. run the notebook

code/notebooks/stft.ipynb

@@ -155,7 +155,7 @@
     "import pandas as pd\n",
     "import numpy as np\n",
     "from scipy.signal import stft, hann\n",
-    "from multiprocessing import Pool\n",
+    "# from multiprocessing import Pool\n",
     "\n",
     "# Function to compute and append STFT data\n",
     "def process_stft(args):\n",
@@ -321,9 +321,9 @@
    "source": [
     "import pandas as pd\n",
     "import matplotlib.pyplot as plt\n",
-    "ready_data1 = []\n",
+    "ready_data1a = []\n",
     "for file in os.listdir('D:/thesis/data/converted/raw/sensor1'):\n",
-    "    ready_data1.append(pd.read_csv(os.path.join('D:/thesis/data/converted/raw/sensor1', file)))\n",
+    "    ready_data1a.append(pd.read_csv(os.path.join('D:/thesis/data/converted/raw/sensor1', file)))\n",
     "# colormesh give title x is frequency and y is time and rotate/transpose the data\n",
     "# Plotting the STFT Data"
    ]
@@ -334,8 +334,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "ready_data1[0]\n",
+    "len(ready_data1a)\n",
-    "plt.pcolormesh(ready_data1[0])"
+    "# plt.pcolormesh(ready_data1[0])"
    ]
   },
   {
@@ -345,7 +345,7 @@
    "outputs": [],
    "source": [
     "for i in range(6):\n",
-    "    plt.pcolormesh(ready_data1[i])\n",
+    "    plt.pcolormesh(ready_data1a[i])\n",
     "    plt.title(f'STFT Magnitude for case {i} sensor 1')\n",
     "    plt.xlabel(f'Frequency [Hz]')\n",
     "    plt.ylabel(f'Time [sec]')\n",
@@ -358,9 +358,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "ready_data2 = []\n",
+    "ready_data2a = []\n",
     "for file in os.listdir('D:/thesis/data/converted/raw/sensor2'):\n",
-    "    ready_data2.append(pd.read_csv(os.path.join('D:/thesis/data/converted/raw/sensor2', file)))"
+    "    ready_data2a.append(pd.read_csv(os.path.join('D:/thesis/data/converted/raw/sensor2', file)))"
    ]
   },
   {
@@ -369,8 +369,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "print(len(ready_data1))\n",
+    "print(len(ready_data1a))\n",
-    "print(len(ready_data2))"
+    "print(len(ready_data2a))"
    ]
   },
   {
@@ -379,10 +379,16 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "x1 = 0\n",
+    "x1a = 0\n",
-    "print(type(ready_data1[0]))\n",
+    "print(type(ready_data1a[0]))\n",
-    "ready_data1[0].iloc[:,0]\n",
+    "ready_data1a[0].iloc[:,0]"
-    "# x1 = x1 + ready_data1[0].shape[0]"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "#### Checking length of the total array"
    ]
   },
   {
@@ -391,16 +397,14 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "x1 = 0\n",
+    "x1a = 0\n",
-    "print(type(x1))\n",
+    "print(type(x1a))\n",
-    "for i in range(len(ready_data1)):\n",
+    "for i in range(len(ready_data1a)):\n",
-    "    # print(ready_data1[i].shape)\n",
+    "    print(type(ready_data1a[i].shape[0]))\n",
-    "    # print(ready_data1[i].)\n",
+    "    x1a = x1a + ready_data1a[i].shape[0]\n",
-    "    print(type(ready_data1[i].shape[0]))\n",
+    "    print(type(x1a))\n",
-    "    x1 = x1 + ready_data1[i].shape[0]\n",
-    "    print(type(x1))\n",
     "\n",
-    "print(x1)"
+    "print(x1a)"
    ]
   },
   {
@@ -409,13 +413,20 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "x2 = 0\n",
+    "x2a = 0\n",
     "\n",
-    "for i in range(len(ready_data2)):\n",
+    "for i in range(len(ready_data2a)):\n",
-    "    print(ready_data2[i].shape)\n",
+    "    print(ready_data2a[i].shape)\n",
-    "    x2 = x2 + ready_data2[i].shape[0]\n",
+    "    x2a = x2a + ready_data2a[i].shape[0]\n",
     "\n",
-    "print(x2)"
+    "print(x2a)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Flatten 6 array into one array"
    ]
   },
   {
@@ -424,28 +435,22 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "x1 = ready_data1[0]\n",
+    "# Combine all dataframes in ready_data1a into a single dataframe\n",
-    "# print(x1)\n",
+    "if ready_data1a:  # Check if the list is not empty\n",
-    "print(type(x1))\n",
+    "    # Use pandas concat function instead of iterative concatenation\n",
-    "for i in range(len(ready_data1) - 1):\n",
+    "    combined_data = pd.concat(ready_data1a, axis=0, ignore_index=True)\n",
-    "    #print(i)\n",
+    "    \n",
-    "    x1 = np.concatenate((x1, ready_data1[i + 1]), axis=0)\n",
+    "    print(f\"Type of combined data: {type(combined_data)}\")\n",
-    "# print(x1)\n",
+    "    print(f\"Shape of combined data: {combined_data.shape}\")\n",
-    "pd.DataFrame(x1)"
+    "    \n",
-   ]
+    "    # Display the combined dataframe\n",
-  },
+    "    combined_data\n",
-  {
+    "else:\n",
-   "cell_type": "code",
+    "    print(\"No data available in ready_data1a list\")\n",
-   "execution_count": null,
+    "    combined_data = pd.DataFrame()\n",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "x2 = ready_data2[0]\n",
     "\n",
-    "for i in range(len(ready_data2) - 1):\n",
+    "# Store the result in x1a for compatibility with subsequent code\n",
-    "    #print(i)\n",
+    "x1a = combined_data"
-    "    x2 = np.concatenate((x2, ready_data2[i + 1]), axis=0)\n",
-    "pd.DataFrame(x2)"
    ]
   },
   {
@@ -454,20 +459,29 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "print(x1.shape)\n",
+    "# Combine all dataframes in ready_data1a into a single dataframe\n",
-    "print(x2.shape)"
+    "if ready_data2a:  # Check if the list is not empty\n",
+    "    # Use pandas concat function instead of iterative concatenation\n",
+    "    combined_data = pd.concat(ready_data2a, axis=0, ignore_index=True)\n",
+    "    \n",
+    "    print(f\"Type of combined data: {type(combined_data)}\")\n",
+    "    print(f\"Shape of combined data: {combined_data.shape}\")\n",
+    "    \n",
+    "    # Display the combined dataframe\n",
+    "    combined_data\n",
+    "else:\n",
+    "    print(\"No data available in ready_data1a list\")\n",
+    "    combined_data = pd.DataFrame()\n",
+    "\n",
+    "# Store the result in x1a for compatibility with subsequent code\n",
+    "x2a = combined_data"
    ]
   },
   {
-   "cell_type": "code",
+   "cell_type": "markdown",
-   "execution_count": null,
    "metadata": {},
-   "outputs": [],
    "source": [
-    "y_1 = [1,1,1,1]\n",
+    "### Creating the label"
-    "y_2 = [0,1,1,1]\n",
-    "y_3 = [1,0,1,1]\n",
-    "y_4 = [1,1,0,0]"
    ]
   },
   {
@@ -490,7 +504,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "y_data = [y_1, y_2, y_3, y_4, y_5, y_6]"
+    "y_data = [y_1, y_2, y_3, y_4, y_5, y_6]\n",
+    "y_data"
    ]
   },
   {
@@ -500,7 +515,7 @@
    "outputs": [],
    "source": [
     "for i in range(len(y_data)):\n",
-    "    print(ready_data1[i].shape[0])"
+    "    print(ready_data1a[i].shape[0])"
    ]
   },
   {
@@ -509,9 +524,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
+    "import numpy as np\n",
     "for i in range(len(y_data)):\n",
-    "    y_data[i] = [y_data[i]]*ready_data1[i].shape[0]\n",
+    "    y_data[i] = [y_data[i]]*ready_data1a[i].shape[0]"
-    "    y_data[i] = np.array(y_data[i])"
    ]
   },
   {
@@ -520,6 +535,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
+    "# len(y_data[0])\n",
     "y_data"
    ]
   },
@@ -552,10 +568,10 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from sklearn.model_selection import train_test_split\n",
+    "from src.ml.model_selection import create_ready_data\n",
     "\n",
-    "x_train1, x_test1, y_train, y_test = train_test_split(x1, y, test_size=0.2, random_state=2)\n",
+    "X1a, y = create_ready_data('D:/thesis/data/converted/raw/sensor1')\n",
-    "x_train2, x_test2, y_train, y_test = train_test_split(x2, y, test_size=0.2, random_state=2)"
+    "X2a, y = create_ready_data('D:/thesis/data/converted/raw/sensor2')"
    ]
   },
   {
@@ -565,6 +581,17 @@
    "outputs": [],
    "source": [
     "from sklearn.model_selection import train_test_split\n",
+    "\n",
+    "x_train1, x_test1, y_train, y_test = train_test_split(X1a, y, test_size=0.2, random_state=2)\n",
+    "x_train2, x_test2, y_train, y_test = train_test_split(X2a, y, test_size=0.2, random_state=2)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
     "from sklearn.metrics import accuracy_score\n",
     "from sklearn.ensemble import RandomForestClassifier, BaggingClassifier\n",
     "from sklearn.tree import DecisionTreeClassifier\n",
@@ -597,16 +624,17 @@
     "\n",
     "\n",
     "# 1. Random Forest\n",
-    "rf_model = RandomForestClassifier()\n",
+    "rf_model1 = RandomForestClassifier()\n",
-    "rf_model.fit(x_train1, y_train)\n",
+    "rf_model1.fit(x_train1, y_train)\n",
-    "rf_pred1 = rf_model.predict(x_test1)\n",
+    "rf_pred1 = rf_model1.predict(x_test1)\n",
     "acc1 = accuracy_score(y_test, rf_pred1) * 100\n",
     "accuracies1.append(acc1)\n",
     "# format with color coded if acc1 > 90\n",
     "acc1 = f\"\\033[92m{acc1:.2f}\\033[00m\" if acc1 > 90 else f\"{acc1:.2f}\"\n",
     "print(\"Random Forest Accuracy for sensor 1:\", acc1)\n",
-    "rf_model.fit(x_train2, y_train)\n",
+    "rf_model2 = RandomForestClassifier()\n",
-    "rf_pred2 = rf_model.predict(x_test2)\n",
+    "rf_model2.fit(x_train2, y_train)\n",
+    "rf_pred2 = rf_model2.predict(x_test2)\n",
     "acc2 = accuracy_score(y_test, rf_pred2) * 100\n",
     "accuracies2.append(acc2)\n",
     "# format with color coded if acc2 > 90\n",
@@ -616,16 +644,17 @@
     "# print(y_test)\n",
     "\n",
     "# 2. Bagged Trees\n",
-    "bagged_model = BaggingClassifier(estimator=DecisionTreeClassifier(), n_estimators=10)\n",
+    "bagged_model1 = BaggingClassifier(estimator=DecisionTreeClassifier(), n_estimators=10)\n",
-    "bagged_model.fit(x_train1, y_train)\n",
+    "bagged_model1.fit(x_train1, y_train)\n",
-    "bagged_pred1 = bagged_model.predict(x_test1)\n",
+    "bagged_pred1 = bagged_model1.predict(x_test1)\n",
     "acc1 = accuracy_score(y_test, bagged_pred1) * 100\n",
     "accuracies1.append(acc1)\n",
     "# format with color coded if acc1 > 90\n",
     "acc1 = f\"\\033[92m{acc1:.2f}\\033[00m\" if acc1 > 90 else f\"{acc1:.2f}\"\n",
     "print(\"Bagged Trees Accuracy for sensor 1:\", acc1)\n",
-    "bagged_model.fit(x_train2, y_train)\n",
+    "bagged_model2 = BaggingClassifier(estimator=DecisionTreeClassifier(), n_estimators=10)\n",
-    "bagged_pred2 = bagged_model.predict(x_test2)\n",
+    "bagged_model2.fit(x_train2, y_train)\n",
+    "bagged_pred2 = bagged_model2.predict(x_test2)\n",
     "acc2 = accuracy_score(y_test, bagged_pred2) * 100\n",
     "accuracies2.append(acc2)\n",
     "# format with color coded if acc2 > 90\n",
@@ -641,8 +670,9 @@
     "# format with color coded if acc1 > 90\n",
     "acc1 = f\"\\033[92m{acc1:.2f}\\033[00m\" if acc1 > 90 else f\"{acc1:.2f}\"\n",
     "print(\"Decision Tree Accuracy for sensor 1:\", acc1)\n",
-    "dt_model.fit(x_train2, y_train)\n",
+    "dt_model2 = DecisionTreeClassifier()\n",
-    "dt_pred2 = dt_model.predict(x_test2)\n",
+    "dt_model2.fit(x_train2, y_train)\n",
+    "dt_pred2 = dt_model2.predict(x_test2)\n",
     "acc2 = accuracy_score(y_test, dt_pred2) * 100\n",
     "accuracies2.append(acc2)\n",
     "# format with color coded if acc2 > 90\n",
@@ -658,8 +688,9 @@
     "# format with color coded if acc1 > 90\n",
     "acc1 = f\"\\033[92m{acc1:.2f}\\033[00m\" if acc1 > 90 else f\"{acc1:.2f}\"\n",
     "print(\"KNeighbors Accuracy for sensor 1:\", acc1)\n",
-    "knn_model.fit(x_train2, y_train)\n",
+    "knn_model2 = KNeighborsClassifier()\n",
-    "knn_pred2 = knn_model.predict(x_test2)\n",
+    "knn_model2.fit(x_train2, y_train)\n",
+    "knn_pred2 = knn_model2.predict(x_test2)\n",
     "acc2 = accuracy_score(y_test, knn_pred2) * 100\n",
     "accuracies2.append(acc2)\n",
     "# format with color coded if acc2 > 90\n",
@@ -675,8 +706,9 @@
     "# format with color coded if acc1 > 90\n",
     "acc1 = f\"\\033[92m{acc1:.2f}\\033[00m\" if acc1 > 90 else f\"{acc1:.2f}\"\n",
     "print(\"Linear Discriminant Analysis Accuracy for sensor 1:\", acc1)\n",
-    "lda_model.fit(x_train2, y_train)\n",
+    "lda_model2 = LinearDiscriminantAnalysis()\n",
-    "lda_pred2 = lda_model.predict(x_test2)\n",
+    "lda_model2.fit(x_train2, y_train)\n",
+    "lda_pred2 = lda_model2.predict(x_test2)\n",
     "acc2 = accuracy_score(y_test, lda_pred2) * 100\n",
     "accuracies2.append(acc2)\n",
     "# format with color coded if acc2 > 90\n",
@@ -692,8 +724,9 @@
     "# format with color coded if acc1 > 90\n",
     "acc1 = f\"\\033[92m{acc1:.2f}\\033[00m\" if acc1 > 90 else f\"{acc1:.2f}\"\n",
     "print(\"Support Vector Machine Accuracy for sensor 1:\", acc1)\n",
-    "svm_model.fit(x_train2, y_train)\n",
+    "svm_model2 = SVC()\n",
-    "svm_pred2 = svm_model.predict(x_test2)\n",
+    "svm_model2.fit(x_train2, y_train)\n",
+    "svm_pred2 = svm_model2.predict(x_test2)\n",
     "acc2 = accuracy_score(y_test, svm_pred2) * 100\n",
     "accuracies2.append(acc2)\n",
     "# format with color coded if acc2 > 90\n",
@@ -709,8 +742,9 @@
     "# format with color coded if acc1 > 90\n",
     "acc1 = f\"\\033[92m{acc1:.2f}\\033[00m\" if acc1 > 90 else f\"{acc1:.2f}\"\n",
     "print(\"XGBoost Accuracy:\", acc1)\n",
-    "xgboost_model.fit(x_train2, y_train)\n",
+    "xgboost_model2 = XGBClassifier()\n",
-    "xgboost_pred2 = xgboost_model.predict(x_test2)\n",
+    "xgboost_model2.fit(x_train2, y_train)\n",
+    "xgboost_pred2 = xgboost_model2.predict(x_test2)\n",
     "acc2 = accuracy_score(y_test, xgboost_pred2) * 100\n",
     "accuracies2.append(acc2)\n",
     "# format with color coded if acc2 > 90\n",
@@ -787,51 +821,10 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "def spectograph(data_dir: str):\n",
+    "from src.ml.model_selection import create_ready_data\n",
-    "    # print(os.listdir(data_dir))\n",
-    "    for damage in os.listdir(data_dir):\n",
-    "        # print(damage)\n",
-    "        d = os.path.join(data_dir, damage)\n",
-    "        # print(d)\n",
-    "        for file in os.listdir(d):\n",
-    "            # print(file)\n",
-    "            f = os.path.join(d, file)\n",
-    "            print(f)\n",
-    "            # sensor1 = pd.read_csv(f, skiprows=1, sep=';')\n",
-    "            # sensor2 = pd.read_csv(f, skiprows=1, sep=';')\n",
     "\n",
-    "            # df1 = pd.DataFrame()\n",
+    "X1b, y = create_ready_data('D:/thesis/data/converted/raw_B/sensor1')\n",
-    "\n",
+    "X2b, y = create_ready_data('D:/thesis/data/converted/raw_B/sensor2')"
-    "            # df1['s1'] = sensor1[sensor1.columns[-1]]\n",
-    "            # df1['s2'] = sensor2[sensor2.columns[-1]]\n",
-    "ed\n",
-    "            # # Combined Plot for sensor 1 and sensor 2 from data1 file in which motor is operated at 800 rpm\n",
-    "\n",
-    "            # plt.plot(df1['s2'], label='sensor 2')\n",
-    "            # plt.plot(df1['s1'], label='sensor 1')\n",
-    "            # plt.xlabel(\"Number of samples\")\n",
-    "            # plt.ylabel(\"Amplitude\")\n",
-    "            # plt.title(\"Raw vibration signal\")\n",
-    "            # plt.legend()\n",
-    "            # plt.show()\n",
-    "\n",
-    "            # from scipy import signal\n",
-    "            # from scipy.signal.windows import hann\n",
-    "\n",
-    "            # vibration_data = df1['s1']\n",
-    "\n",
-    "            # # Applying STFT\n",
-    "            # window_size = 1024\n",
-    "            # hop_size = 512\n",
-    "            # window = hann(window_size)  # Creating a Hanning window\n",
-    "            # frequencies, times, Zxx = signal.stft(vibration_data, window=window, nperseg=window_size, noverlap=window_size - hop_size)\n",
-    "\n",
-    "            # # Plotting the STFT Data\n",
-    "            # plt.pcolormesh(times, frequencies, np.abs(Zxx), shading='gouraud')\n",
-    "            # plt.title(f'STFT Magnitude for case 1 signal sensor 1 ')\n",
-    "            # plt.ylabel('Frequency [Hz]')\n",
-    "            # plt.xlabel('Time [sec]')\n",
-    "            # plt.show()"
    ]
   },
   {
@@ -840,7 +833,115 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "spectograph('D:/thesis/data/converted/raw')"
+    "y.shape"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from sklearn.metrics import accuracy_score, classification_report\n",
+    "# 4. Validate on Dataset B\n",
+    "y_pred_svm = svm_model.predict(X1b)\n",
+    "\n",
+    "# 5. Evaluate\n",
+    "print(\"Accuracy on Dataset B:\", accuracy_score(y, y_pred_svm))\n",
+    "print(classification_report(y, y_pred_svm))"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from sklearn.metrics import accuracy_score, classification_report\n",
+    "# 4. Validate on Dataset B\n",
+    "y_pred = rf_model2.predict(X2b)\n",
+    "\n",
+    "# 5. Evaluate\n",
+    "print(\"Accuracy on Dataset B:\", accuracy_score(y, y_pred))\n",
+    "print(classification_report(y, y_pred))"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "y_predict = svm_model2.predict(X2b.iloc[[5312],:])\n",
+    "print(y_predict)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "y[5312]"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Confusion Matrix"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import matplotlib.pyplot as plt\n",
+    "from sklearn.metrics import confusion_matrix, ConfusionMatrixDisplay\n",
+    "\n",
+    "\n",
+    "cm = confusion_matrix(y, y_pred_svm) # -> ndarray\n",
+    "\n",
+    "# get the class labels\n",
+    "labels = svm_model.classes_\n",
+    "\n",
+    "# Plot\n",
+    "disp = ConfusionMatrixDisplay(confusion_matrix=cm, display_labels=labels)\n",
+    "disp.plot(cmap=plt.cm.Blues)  # You can change colormap\n",
+    "plt.title(\"SVM Sensor1 CM Train w/ Dataset A Val w/ Dataset B\")\n",
+    "plt.show()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "#### Self-test CM"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# 1. Predict sensor 1 on Dataset A\n",
+    "y_train_pred = svm_model.predict(x_train1)\n",
+    "\n",
+    "# 2. Import confusion matrix tools\n",
+    "from sklearn.metrics import confusion_matrix, ConfusionMatrixDisplay\n",
+    "import matplotlib.pyplot as plt\n",
+    "\n",
+    "# 3. Create and plot confusion matrix\n",
+    "cm_train = confusion_matrix(y_train, y_train_pred)\n",
+    "labels = svm_model.classes_\n",
+    "\n",
+    "disp = ConfusionMatrixDisplay(confusion_matrix=cm_train, display_labels=labels)\n",
+    "disp.plot(cmap=plt.cm.Blues)\n",
+    "plt.title(\"Confusion Matrix: Train & Test on Dataset A\")\n",
+    "plt.show()\n"
    ]
   }
  ],

code/src/ml/model_selection.py

@@ -0,0 +1,57 @@
+import numpy as np
+import pandas as pd
+import os
+from sklearn.model_selection import train_test_split as sklearn_split
+
+
+def create_ready_data(
+    stft_data_path: str,
+    stratify: np.ndarray = None,
+) -> tuple:
+    """
+    Create a stratified train-test split from STFT data.
+
+    Parameters:
+    -----------
+    stft_data_path : str
+        Path to the directory containing STFT data files (e.g. 'data/converted/raw/sensor1')
+    stratify : np.ndarray, optional
+        Labels to use for stratified sampling
+
+    Returns:
+    --------
+    tuple
+        (X_train, X_test, y_train, y_test) - Split datasets
+    """
+    ready_data = []
+    for file in os.listdir(stft_data_path):
+        ready_data.append(pd.read_csv(os.path.join(stft_data_path, file)))
+
+    y_data = [i for i in range(len(ready_data))]
+
+    # Combine all dataframes in ready_data into a single dataframe
+    if ready_data:  # Check if the list is not empty
+        # Use pandas concat function instead of iterative concatenation
+        combined_data = pd.concat(ready_data, axis=0, ignore_index=True)
+
+        print(f"Type of combined data: {type(combined_data)}")
+        print(f"Shape of combined data: {combined_data.shape}")
+    else:
+        print("No data available in ready_data list")
+        combined_data = pd.DataFrame()
+
+    # Store the result in x1a for compatibility with subsequent code
+    X = combined_data
+
+    for i in range(len(y_data)):
+        y_data[i] = [y_data[i]] * ready_data[i].shape[0]
+        y_data[i] = np.array(y_data[i])
+
+    if y_data:
+        # Use numpy concatenate function instead of iterative concatenation
+        y = np.concatenate(y_data, axis=0)
+    else:
+        print("No labels available in y_data list")
+        y = np.array([])
+
+    return X, y

latex/frontmatter/maketitle.tex

@@ -1,31 +1,30 @@
 \begin{titlepage}
-    \centering
+\centering
-    \vspace*{1cm}
+\vspace*{1cm}
-    
+
-    {\fontsize{14pt}{16pt}\selectfont \textbf{\MakeUppercase{Tugas Akhir}}\par}
+{\fontsize{14pt}{16pt}\selectfont \textbf{\MakeUppercase{Tugas Akhir}}\par}
-    \vspace{1.5cm}
+\vspace{1.5cm}
-    
+
-    {\fontsize{14pt}{16pt}\selectfont \textbf{\MakeUppercase{\thesistitle}}\par}
+{\fontsize{14pt}{16pt}\selectfont \textbf{\MakeUppercase{\thetitle}}\par}
-    \vspace{1.5cm}
+\vspace{1.5cm}
-    
+
-    \includegraphics[width=5cm]{frontmatter/img/logo.png}
+\includegraphics[width=5cm]{frontmatter/img/logo.png}
-    \vspace{1.5cm}
+\vspace{1.5cm}
-    
+
-    
+
-    \textbf{Disusun oleh:} \\
+\textbf{Disusun oleh:} \\
-    {\fontsize{14pt}{16pt}\selectfont \textbf{\studentname}} \\
+{\fontsize{14pt}{16pt}\selectfont \textbf{\theauthor}} \\
-    {\fontsize{14pt}{16pt}\selectfont \textbf{\studentid}} \\
+{\fontsize{14pt}{16pt}\selectfont \textbf{\studentid}} \\
-    
+
-    
+
-    \vfill
+\vfill
-    
+
-    {\fontsize{12pt}{14pt}\selectfont
+{\fontsize{12pt}{14pt}\selectfont
-    \textbf{\program} \\
+\textbf{\program} \\
-    \textbf{\faculty} \\
+\textbf{\faculty} \\
-    \textbf{\university} \\
+\textbf{\university} \\
-    \textbf{\yearofsubmission}
+\textbf{\yearofsubmission}
-    }
+}
-    
+
-    \end{titlepage}%
+\end{titlepage}%
-    
+
-    

latex/frontmatter/maketitle_secondary.tex

@@ -0,0 +1,29 @@
+\begin{titlepage}
+\centering
+{\fontsize{14pt}{16pt}\selectfont \textbf{\MakeUppercase{Tugas Akhir}}\par}
+\vspace{1.5cm}
+
+{\fontsize{14pt}{16pt}\selectfont \textbf{\MakeUppercase{\thetitle}}\par}
+\vspace{1cm}
+{\normalsize\selectfont Diajukan guna melengkapi persyaratan untuk memenuhi gelar Sarjana Teknik di Program Studi Teknik Sipil, Fakultas Teknik, Universitas Muhammadiyah Yogyakarta\par}
+\vspace{1.5cm}
+
+\includegraphics[width=5cm]{frontmatter/img/logo.png}
+\vspace{1.5cm}
+
+
+\textbf{Disusun oleh:} \\
+{\fontsize{14pt}{16pt}\selectfont \textbf{\theauthor}} \\
+{\fontsize{14pt}{16pt}\selectfont \textbf{\studentid}} \\
+
+
+\vfill
+
+{\fontsize{12pt}{14pt}\selectfont
+\textbf{\program} \\
+\textbf{\faculty} \\
+\textbf{\university} \\
+\textbf{\yearofsubmission}
+}
+
+\end{titlepage}%

latex/thesis.cls

@@ -21,17 +21,25 @@
 \RequirePackage{tocloft}
 \RequirePackage{tocbibind}
 \RequirePackage{amsmath,amsfonts,amssymb}
+\RequirePackage{svg}           % Allows including SVG images directly
+\RequirePackage{indentfirst}   % Makes first paragraph after headings indented
+\RequirePackage{float}         % Provides [H] option to force figure/table placement
 
 % Polyglossia set language
-\setmainlanguage{bahasai}
++ \setdefaultlanguage[variant=indonesian]{malay}  % Proper Indonesian language setup
-% \setotherlanguage{english}
++ \setotherlanguage{english}             % Enables English as secondary language
+
++ \DefineBibliographyStrings{english}{%  % Customizes bibliography text
++   andothers={dkk\adddot},              % Changes "et al." to "dkk."
++   pages={hlm\adddot},                  % Changes "pp." to "hlm."
++ }
 
 % Conditionally load the watermark package and settings
 \if@draftmark
   \RequirePackage{draftwatermark}
-  \SetWatermarkText{Draft: \today [wip]}
+  \SetWatermarkText{nuluh/thesis (wip) draft: \today}
-  \SetWatermarkColor[gray]{0.7}
+  \SetWatermarkColor[gray]{0.8}                    % Opacity: 0.8 = 20% transparent  
-  \SetWatermarkFontSize{2cm}
+  \SetWatermarkFontSize{1.5cm}
   \SetWatermarkAngle{90}
   \SetWatermarkHorCenter{1.5cm}
 \fi
@@ -79,7 +87,10 @@
 }
 
 % Chapter formatting
-\titlespacing{\chapter}{0pt}{0pt}{*1.5}
+\titlespacing{\chapter}{0pt}{0cm}{*1.5}    % 0pt→0cm: same value, different unit
+                                             % 0pt = no space above chapter title
+                                             % *1.5 = 1.5× line spacing after title
+
 \titleformat{\chapter}[display]
   {\normalsize\bfseries\centering}
   {BAB~\Roman{chapter}} % << display format
@@ -91,6 +102,10 @@
 \titleformat{\subsection}
     {\normalsize\bfseries}{\thesubsection}{1em}{}
 
+% Section numbering depth
+\setcounter{secnumdepth}{3}               % Enables numbering for:
+                                          % 1 = chapters, 2 = sections, 3 = subsections
+
 % Ensure chapter reference in TOC matches
 \renewcommand{\cftchappresnum}{BAB~}
 \renewcommand{\cftchapaftersnum}{\quad}
@@ -108,16 +123,22 @@
 
 
 % Dot leaders, spacing, indentation
+\setlength{\cftbeforetoctitleskip}{0cm}   % Space above "DAFTAR ISI" title
+\setlength{\cftbeforeloftitleskip}{0cm}   % Space above "DAFTAR GAMBAR" title  
+\setlength{\cftbeforelottitleskip}{0cm}   % Space above "DAFTAR TABEL" title
+
 \setlength{\cftbeforechapskip}{0em}
 \setlength{\cftchapindent}{0pt}
 \setlength{\cftsecindent}{0em}
-\setlength{\cftsubsecindent}{2.5em}
+\setlength{\cftsubsecindent}{2em}
 \setlength{\cftchapnumwidth}{3.5em}
-\setlength{\cftsecnumwidth}{3.5em}
+\setlength{\cftsecnumwidth}{2em}
 \setlength{\cftsubsecnumwidth}{2.5em}
 \setlength{\cftfignumwidth}{5em}
 \setlength{\cfttabnumwidth}{4em}
-\renewcommand \cftchapdotsep{4.5} % https://tex.stackexchange.com/a/273764
+\renewcommand \cftchapdotsep{1}           % Denser dots (closer together) https://tex.stackexchange.com/a/273764
+\renewcommand \cftsecdotsep{1}            % Apply to sections too
+\renewcommand \cftsubsecdotsep{1}         % Apply to subsections too
 \renewcommand{\cftchapleader}{\normalfont\cftdotfill{\cftsecdotsep}}
 \renewcommand{\cftchappagefont}{\normalfont}
 \renewcommand{\cftfigpresnum}{\figurename~}

setup.py

@@ -0,0 +1,8 @@
+from setuptools import setup, find_packages
+
+setup(
+    name="thesisrepo",
+    version="0.1",
+    packages=find_packages(where="code"),
+    package_dir={"": "code"},
+)