#!/bin/bash

# Define the base directory
base_dir="thesis-monorepo"

# Create the main directory structure
mkdir -p "$base_dir"/{code/{data/{raw,processed},notebooks,src/{data,features,models,visualization}},docs/{literature_review/paper_summaries,methodology,results},latex/{chapters,frontmatter,backmatter,figures,tables},results/{figures,tables}}

# Create notebooks
for nb in {01_data_exploration,02_fft_implementation,03_feature_extraction,04_svm_modeling,05_results_analysis}; do
    touch "$base_dir"/code/notebooks/"$nb".ipynb
done

# Create LaTeX chapters
for chapter in {01_introduction,02_literature_review,03_methodology,04_results,05_conclusion}; do
    touch "$base_dir"/latex/chapters/"$chapter".tex
done

# Create LaTeX frontmatter files
for front in abstract acknowledgements title_page; do
    touch "$base_dir"/latex/frontmatter/"$front".tex
done

# Create LaTeX backmatter files
for back in appendices bibliography; do
    touch "$base_dir"/latex/backmatter/"$back".tex
done

# Create main LaTeX files
touch "$base_dir"/latex/{main.tex,bibliography.bib,thesis.sty}

# Create main project files
touch "$base_dir"/{.gitignore,README.md,requirements.txt,LICENSE}

echo "Thesis directory structure created successfully."